Errors and warnings concerning the query are displayed in red here. When the query matches a gene synonym, a message similar to this will appear:
[query] matches:   [S], a synonym of G in O. G is shown in results.
S is the gene (S)ynonym matched by query.
G is the standard (G)ene symbol of S.
G is a gene in (O)rganism.
G will be shown and highlighted in the results, instead of S.
This message helps interpret the results by alerting you to the standard gene names of synonyms that matched the query.
In the example image at the top of the page, the query rad* matched synonyms of raps, SSL2, okr, HPR5, and, MRE11.
Models are scored by the number of matching query terms (gene names, GO term accessions, and/or GO term names). When viewing similar models, this score is the number of genes shared between the Query model and the model on each row of the results.
Model
Clicking on the thumbnail gives you a larger picture of the model. Links below may include:
[PubMed] - link to PubMed abstract
[legend] - link to legend/published-figures for interpreting the model
[website] - link to supplementary website
[sif] - text representation the model in Cytoscape (S)imple (I)nteraction (F)ormat.
Matches
Query terms matching the model are highlighted here.